YNL163C / RIA1

Cytoplasmic GTPase/eEF2-like factor involved in ribosomal biogenesis; with Sdo1p, promotes release of Tif6p from 60S ribosomal subunits in the cytoplasm so that they can assemble with 40S subunits to generate mature ribosomes; required for quality control check of newly made large ribosomal subunits before they are released into the pool of translating ribosomes

Zygosity: Heterozygous strain
fixedexpanded
Profile for YNL163C / RIA1

Click on Significant Values for Screen Details ID:SGTC_7|Compound:0192-1582|FD-Score:3.98|P-value:1.37E-5 ID:SGTC_18|Compound:0111-0177|FD-Score:3.74|P-value:3.96E-5 ID:SGTC_34|Compound:0469-0683|FD-Score:3.18|P-value:4.10E-4 ID:SGTC_62|Compound:0180-0423|FD-Score:3.61|P-value:7.19E-5 ID:SGTC_67|Compound:0335-0847|FD-Score:-4.32|P-value:2.31E-6 ID:SGTC_97|Compound:0535-0701|FD-Score:3.04|P-value:6.81E-4 ID:SGTC_116|Compound:0155-0182|FD-Score:-6.97|P-value:7.67E-14 ID:SGTC_145|Compound:3737-0113|FD-Score:3.36|P-value:2.03E-4 ID:SGTC_346|Compound:4513-0042|FD-Score:3.32|P-value:2.37E-4 ID:SGTC_348|Compound:k064-0012|FD-Score:3.71|P-value:4.55E-5 ID:SGTC_504|Compound:lovastatin|FD-Score:5.01|P-value:6.31E-8 ID:SGTC_772|Compound:k072-0172|FD-Score:3.99|P-value:1.33E-5 ID:SGTC_1196|Compound:1588-0294|FD-Score:4.70|P-value:3.53E-7 ID:SGTC_1199|Compound:1638-0010|FD-Score:-3.37|P-value:1.73E-4 ID:SGTC_1207|Compound:2099-0101|FD-Score:-3.44|P-value:1.32E-4 ID:SGTC_1265|Compound:0819-1001|FD-Score:3.74|P-value:3.97E-5 ID:SGTC_1305|Compound:1181-0477|FD-Score:3.06|P-value:6.41E-4 ID:SGTC_1362|Compound:1611-0397|FD-Score:3.65|P-value:6.00E-5 ID:SGTC_1474|Compound:0330-0125|FD-Score:3.59|P-value:7.59E-5 ID:SGTC_1490|Compound:4089-0339|FD-Score:-3.87|P-value:2.03E-5 ID:SGTC_1937|Compound:st074714|FD-Score:3.33|P-value:2.28E-4 ID:SGTC_1951|Compound:sophoraflavanone G|FD-Score:3.34|P-value:2.19E-4 ID:SGTC_2554|Compound:13-methyl-4,4-bisnor-8,11,13-podocarpatrien-3-one|FD-Score:3.20|P-value:3.79E-4 ID:SGTC_2604|Compound:4'-hydroxychalcone|FD-Score:-5.04|P-value:4.57E-8 ID:SGTC_2658|Compound:polymyxin b sulfate|FD-Score:3.65|P-value:5.96E-5 ID:SGTC_2664|Compound:lyso-paf C-16|FD-Score:-3.32|P-value:2.15E-4 ID:SGTC_2798|Compound:7813637|FD-Score:-3.22|P-value:3.15E-4 ID:SGTC_2885|Compound:9057732|FD-Score:-2.94|P-value:9.12E-4 ID:SGTC_2976|Compound:9009005|FD-Score:3.33|P-value:2.29E-4 ID:SGTC_3217|Compound:9129673|FD-Score:4.23|P-value:4.12E-6 ID:SGTC_7|Compound:0192-1582|FD-Score:3.98|P-value:1.37E-5 ID:SGTC_18|Compound:0111-0177|FD-Score:3.74|P-value:3.96E-5 ID:SGTC_34|Compound:0469-0683|FD-Score:3.18|P-value:4.10E-4 ID:SGTC_62|Compound:0180-0423|FD-Score:3.61|P-value:7.19E-5 ID:SGTC_67|Compound:0335-0847|FD-Score:-4.32|P-value:2.31E-6 ID:SGTC_97|Compound:0535-0701|FD-Score:3.04|P-value:6.81E-4 ID:SGTC_116|Compound:0155-0182|FD-Score:-6.97|P-value:7.67E-14 ID:SGTC_145|Compound:3737-0113|FD-Score:3.36|P-value:2.03E-4 ID:SGTC_346|Compound:4513-0042|FD-Score:3.32|P-value:2.37E-4 ID:SGTC_348|Compound:k064-0012|FD-Score:3.71|P-value:4.55E-5 ID:SGTC_504|Compound:lovastatin|FD-Score:5.01|P-value:6.31E-8 ID:SGTC_772|Compound:k072-0172|FD-Score:3.99|P-value:1.33E-5 ID:SGTC_1196|Compound:1588-0294|FD-Score:4.70|P-value:3.53E-7 ID:SGTC_1199|Compound:1638-0010|FD-Score:-3.37|P-value:1.73E-4 ID:SGTC_1207|Compound:2099-0101|FD-Score:-3.44|P-value:1.32E-4 ID:SGTC_1265|Compound:0819-1001|FD-Score:3.74|P-value:3.97E-5 ID:SGTC_1305|Compound:1181-0477|FD-Score:3.06|P-value:6.41E-4 ID:SGTC_1362|Compound:1611-0397|FD-Score:3.65|P-value:6.00E-5 ID:SGTC_1474|Compound:0330-0125|FD-Score:3.59|P-value:7.59E-5 ID:SGTC_1490|Compound:4089-0339|FD-Score:-3.87|P-value:2.03E-5 ID:SGTC_1937|Compound:st074714|FD-Score:3.33|P-value:2.28E-4 ID:SGTC_1951|Compound:sophoraflavanone G|FD-Score:3.34|P-value:2.19E-4 ID:SGTC_2554|Compound:13-methyl-4,4-bisnor-8,11,13-podocarpatrien-3-one|FD-Score:3.20|P-value:3.79E-4 ID:SGTC_2604|Compound:4'-hydroxychalcone|FD-Score:-5.04|P-value:4.57E-8 ID:SGTC_2658|Compound:polymyxin b sulfate|FD-Score:3.65|P-value:5.96E-5 ID:SGTC_2664|Compound:lyso-paf C-16|FD-Score:-3.32|P-value:2.15E-4 ID:SGTC_2798|Compound:7813637|FD-Score:-3.22|P-value:3.15E-4 ID:SGTC_2885|Compound:9057732|FD-Score:-2.94|P-value:9.12E-4 ID:SGTC_2976|Compound:9009005|FD-Score:3.33|P-value:2.29E-4 ID:SGTC_3217|Compound:9129673|FD-Score:4.23|P-value:4.12E-6

Top fitness defect scores for YNL163C deletion by condition

RankScreen IDConditionFD ScoreConc
P-value
Response
Signature		Screen
Rank
Screen
P-value
Screen
Clearance
1 SGTC_504 lovastatin 5.01 124.0 µM 6.31E-8 1 2.72E-7 0.38
2 SGTC_1196 1588-0294 4.70 184.0 µM 3.53E-7 3 1.29E-6 0.42
3 SGTC_3217 9129673 4.23 49.5 µM 4.12E-6 7 1.18E-5 0.19
4 SGTC_772 k072-0172 3.99 35.3 µM 1.33E-5 3 3.37E-5 0.35
5 SGTC_7 0192-1582 3.98 4.2 µM 1.37E-5 2 3.46E-5 0.15
6 SGTC_18 0111-0177 3.74 500.0 nM 3.96E-5 5 9.04E-5 0.43
7 SGTC_1265 0819-1001 3.74 68.8 µM 3.97E-5 10 9.06E-5 0.30
8 SGTC_348 k064-0012 3.71 10.7 µM 4.55E-5 60S ribosome export 9 1.02E-4 0.21
9 SGTC_2658 polymyxin b sulfate 3.65 77.0 µM 5.96E-5 NEO1 14 1.31E-4 0.00
10 SGTC_1362 1611-0397 3.65 101.0 µM 6.00E-5 5 1.32E-4 0.03
11 SGTC_62 0180-0423 3.61 3.2 µM 7.19E-5 60S ribosome export 16 1.55E-4 0.07
12 SGTC_1474 0330-0125 3.59 5.3 µM 7.59E-5 5 1.63E-4 0.17
13 SGTC_145 3737-0113 3.36 38.4 µM 2.03E-4 DNA intercalators 65 3.95E-4 0.01
14 SGTC_1951 sophoraflavanone G 3.34 9.2 µM 2.19E-4 RNA processing & uracil transport 6 4.23E-4 0.08
15 SGTC_1937 st074714 3.33 47.2 µM 2.28E-4 5 4.38E-4 0.16
16 SGTC_2976 9009005 3.33 19.5 µM 2.29E-4 11 4.40E-4 0.10
17 SGTC_346 4513-0042 3.32 7.2 µM 2.37E-4 azole & statin 15 4.55E-4 0.08
18 SGTC_2554 13-methyl-4,4-bisnor-8,11,13-podocarpatrien-3-one 3.20 66.7 µM 3.79E-4 6 6.94E-4 0.17
19 SGTC_34 0469-0683 3.18 81.8 µM 4.10E-4 SWF1 & branched chain AA biosynthesis 11 7.46E-4 0.04
20 SGTC_1305 1181-0477 3.06 144.0 µM 6.41E-4 13 0.00112 0.10

Download Fitness data (tab-delimited text)  (excel)
Cofit Genes
Download Cofitness data (tab-delimited text)  (excel)

Correlation pval ORF Gene Zygosity Description
0.167 1.70E-22 YBR068C BAP2 hom High-affinity leucine permease; functions as a branched-chain amino acid permease involved in uptake of leucine, isoleucine and valine; contains 12 predicted transmembrane domains; BAP2 has a paralog, BAP3, that arose from the whole genome duplication
0.151 1.82E-18 YDR054C CDC34 het Ubiquitin-conjugating enzyme (E2); catalytic subunit of SCF ubiquitin-protein ligase complex (together with Skp1p, Rbx1p, Cdc53p, and an F-box protein) that regulates cell cycle progression by targeting key substrates for degradation; protein abundance increases in response to DNA replication stress
0.142 1.60E-16 YBR155W CNS1 het TPR-containing co-chaperone; binds both Hsp82p (Hsp90) and Ssa1p (Hsp70) and stimulates the ATPase activity of SSA1, ts mutants reduce Hsp82p function while over expression suppresses the phenotypes of an HSP82 ts allele and a cpr7 deletion
0.139 6.47E-16 YDL153C SAS10 het Essential subunit of U3-containing Small Subunit (SSU) processome complex involved in production of 18S rRNA and assembly of small ribosomal subunit; disrupts silencing when overproduced; mutant has increased aneuploidy tolerance
0.138 1.27E-15 YDR235W PRP42 het U1 snRNP protein involved in splicing, required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats
0.135 4.86E-15 YER043C SAH1 het S-adenosyl-L-homocysteine hydrolase, catabolizes S-adenosyl-L-homocysteine which is formed after donation of the activated methyl group of S-adenosyl-L-methionine (AdoMet) to an acceptor
0.135 4.95E-15 YKL152C GPM1 het Tetrameric phosphoglycerate mutase, mediates the conversion of 3-phosphoglycerate to 2-phosphoglycerate during glycolysis and the reverse reaction during gluconeogenesis
0.122 1.43E-12 YER052C HOM3 hom Aspartate kinase (L-aspartate 4-P-transferase); cytoplasmic enzyme that catalyzes the first step in the common pathway for methionine and threonine biosynthesis; expression regulated by Gcn4p and the general control of amino acid synthesis
0.117 9.15E-12 YLR195C NMT1 het N-myristoyl transferase, catalyzes the cotranslational, covalent attachment of myristic acid to the N-terminal glycine residue of several proteins involved in cellular growth and signal transduction
0.112 7.55E-11 YBR221C PDB1 hom E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, which is an evolutionarily-conserved multi-protein complex found in mitochondria
0.112 8.90E-11 YHR019C DED81 het Cytosolic asparaginyl-tRNA synthetase, required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA
0.111 1.16E-10 YGR145W ENP2 het Essential nucleolar protein, required for biogenesis of the small ribosomal subunit; contains WD repeats, interacts with Mpp10p and Bfr2p, and has homology to Spb1p
0.108 3.23E-10 YGR030C POP6 het Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs
0.105 9.38E-10 YOL133W HRT1 het RING finger containing subunit of Skp1-Cullin-F-box ubiquitin protein ligases (SCF); required for Gic2p, Far1p, Sic1p and Cln2p degradation; may tether Cdc34p (a ubiquitin conjugating enzyme or E2) and Cdc53p (a cullin) subunits of SCF
0.105 1.08E-9 YBL023C MCM2 het Protein involved in DNA replication; component of the Mcm2-7 hexameric complex that binds chromatin as a part of the pre-replicative complex; relative distribution to the nucleus increases upon DNA replication stress